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Associate Software Engineer Bio IT

1.00 to 3.00 Years   Bangalore   09 Mar, 2020
Job LocationBangalore
EducationNot Mentioned
SalaryNot Disclosed
IndustryIT - Software
Functional AreaGeneral / Other Software
EmploymentTypeFull-time

Job Description

Job Description

POSITION TITLE: Associate Software Engineer

REPORTING TO: Manager

REPORTING LOCATION: Bangalore

WORKING LOCATION: Bangalore

SUMMARY OF POSITION AND OBJECTIVES:

With knowledge and experience in Bio-Informetics, the candidate needs to be proficient in Analyzing sequencing data and interpreting results.

Usage of bioinformatics tools and the development of pipelines for RNA/DNA Sequencing with the help of Unix based operating systems, job queuing systems.

POSITION & OBJECTIVES :

Job description:

  • Project Management of Sequencing based Bioinformatics Projects including data analysis, management, consulting and interpretation of results.
  • Conceptualizing and developing customized bioinformatics solutions including interactive analysis for various sequencing based products.
  • Contribute to the maintenance and development of bioinformatics tools and resources through knowledge of internally developed systems, open-source programs and commercial applications.
  • Benchmarking different tools on standard/gold standard datasets.
  • Work with R&D team members to develop, implement and maintain functioning pipelines and applications upstream and downstream of NGS data analysis, interpretation and reporting workflows.
  • Support project management team through troubleshooting and resolution of encountered issues with data analysis and customer concerns.

Document all aspects of the bioinformatics environment for existing systems and newly implemented systems in a QM compliant way. Ensure versioning through a source control system of all pipelines, configurations, algorithms, tools and applications used in production workflows.

Experience : 1- 3 years

Requirements:

Masters in Bioinformatics or Biotechnology or any other equivalent degree.

Experience in analyzing sequencing data and interpreting results.

Experience in the application of bioinformatics tools and the development of pipelines in the field of DNA/ RNA sequencing is ideal.

Programming experience in - Python, bash, R/ Bioconductor.

Familiarity with Unix based operating systems, job queuing systems (eg. SGE), git, Docker and common workflow language (CWL) based frameworks.

Good knowledge of written and spoken English is required.

R/ Shiny based or alternative dashboard development experience (advantage).

Experience in cloud computing (advantage).

Methodology we have in place and expect to be used:

  • Kanban, Lean, Scaled Agile, Zero Defect development method
  • Daily Stand-ups with other developers directly involved
  • Scrum of Scrums, Innovation Sprints (after every 3rd Sprint)
  • Continuous integration
  • Automatic Build and Deployments
  • Automated Unit & Functional Testing
  • Follow Development guidelines and coding style
Qualifications

Masters in Bioinformatics or Biotechnology or any other equivalent degree

,

Keyskills :
javasql javascriptmysql htmldata analysis control systemspoken english cloud computing

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